2019
Borianne P., Sarron J., Borne F., Faye É. (2019) Deep Mangoes: from fruit detection to cultivar identification in color images of mango trees. DISP ’19, International Conference on Digital Image and Signal Processing Oxford, United Kingdom ISBN: 978-1-912532-09-4
2018
Borianne, P., Subsol, G., Fallavier, F., Dardou, A., Audebert, A. (2018). GT-RootS: An integrated software for automated root system measurement from high-throughput phenotyping platform images. Computers and Electronics in Agriculture 150 (2018) 328–342
De Reffye, P., Jaeger, M., Barthélémy, D., Houlier, F.. Ouvrage. Architecture et croissance des plantes. Modélisation et application. Edition QUAE, collection Repères, 2018, à paraître, 12 chapitres, 450 pages.
Proisy, C., Viennois, G., Sidik, F., Andayani, A., Enright, J. A., Guitet, S., Gusmawati, N., Lemonnier, H., Muthusankar, G., Olagoke, A., Prosperi, J., Rahmania, R., Ricout, A., Soulard, B., Suhardjono, 2018. Monitoring mangrove forests after aquaculture abandonment using time series of very high spatial resolution satellite images: A case study from the Perancak estuary, Bali, Indonesia. Marine Pollution Bulletin.
J.W. Guo, S.B. Xu, D.M. Yan, Z.L. Cheng, M. Jaeger, X.P. Zhang. 2018. Realistic Procedural Plant Modeling from Multiple View Images. IEEE Transactions on Visualization and Computer Graphics, 2018. Doi: 10.1109/TVCG.2018.2869784
M. Jaeger, S. Sabatier, P. Borianne, P. de Reffye, V. Letort, Y. Gang, X.P. Zhang, M.Z. Kang. 2018. Data visualization for vegetal landscapes: Building 3D representations of organ biomass compartments. How plant production could constrain 3D lollypop-like representations. IEEE Proceedings of PMA’18 Anhui China. In press
———- actes conférence
Viennois, G., Borne, F., Jaeger, M., Borianne, P. 2018. Quelle vérité terrain pour les réseaux de neurones en imagerie drone ? Application à la détection de palmier Raphia en forêts au Gabon – CFPT 2018
Zegaoui, Chaumont, M., Subsol, G., Borianne, P., Derras. 2018 First Experiments of Deep Learning on LiDAR Point Clouds for Classification of Urban Objects – CFPT 2018
2017
Borianne, P., Subsol, G., & Caraglio, Y. (2017). Automated efficient computation of crown transparency from tree silhouette images. Computers and Electronics in Agriculture, 133, 108-118.
Kennel, P.; Fiorio, C.; Borne, F. (2017)
Supervised image segmentation using Q-Shift Dual-Tree complex wavelet transform coefficients with a texton approach. Pattern Analysis and Applications , 20: 227-237.
Borne, F.; Viennois, G. (2017)
Texture-based classification for characterizing regions on remote sensing images. Journal of Applied Remote Sensing , 11(3) : 036028.
Zhang, Y. X.; Bao, G.; Meng, W.; Jaeger, M.; Li, H.; Deussen, O.; Chen, B. (2017). Tree branch level of detail models for forest navigation. Computer Graphics Forum, doi:10.1111/cgf.13088.
Viennois, G., Stévart, T., Vande Weghe, J. P., Saatchi, S. S., Schill, S., Aldous, A., Paiz, M.-C., Boupoya, A., Barbier, N., 2017. Cartographie de la végétation. In Stévart, T., Vande Weghe, J. P. (Eds) Le delta de l Ogooué. Libreville : Agence National des Parcs Nationaux, 199-222 p.
2016
Borianne, P. ; Subsol, G., Audebert, A. (2016). Automated Characterization of the Mature Root System Form by a Double-Quadrangle-Shaped Polygon. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Qingdao, China, pp. 6-15. doi: 10.1109/FSPMA.2016.7818282.
Jaeger, M.., de Reffye, P., Sabatier, S., Letort – Le Chevalier, V., Heuvelink, E., Caraglio, Y., Motisi, N., Krit, H., Lafond, M.-H., Kang, M.-G., Zhang, B.-G. (2016). Plant growth architecture and production dynamics: A set of e-learning resources. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Qingdao, China, pp. 83-89. doi: 10.1109/FSPMA.2016.7818292.
Kang, M.-G., de Reffye, P., Hua, J., Jaeger, M. (2016). Parameter identification of plant growth models with stochastic development, IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Qingdao, China, pp. 98-105. doi: 10.1109/FSPMA.2016.7818294.
Jaeger, M. ., 2016. Calibration, implémentation et mise en oeuvre du modèle GreenLab. In: de Reffye, P., Jaeger, M., Barthélémy, D., Houllier, F., coordinateurs. 2016. Architecture et croissance des plantes. Editions QUAE. ISBN : 978-2-7592-2622-1 (ebook)
Jaeger, M.., Subsol, G., 2016. Modèles pour la représentation et la visualisation des plantes et des paysages. In: de Reffye, P., Jaeger, M., Barthélémy, D., Houllier, F., coordinateurs. 2016. Architecture et croissance des plantes. Editions QUAE. ISBN : 978-2-7592-2622-1 (ebook)
de Reffye, P., Jaeger, M., 2016. Applications diverses de l’architecture des plantes. In: de Reffye, P., Jaeger, M., Barthélémy, D., Houllier, F., coordinateurs. 2016. Architecture et croissance des plantes. Editions QUAE. ISBN : 978-2-7592-2622-1 (ebook)
Barbier, N., Libalah, M., Katembo, J., Ploton, P., Droissart, V., Texier, N., Kamdem, N. G., Viennois, G., Pélissier, R., Couteron, P., Boyemba, F., Sonké, B., 2016. Pistes pour l’étude de la distribution des peuplements de Gilbertiodedron dewevrei comme signature des impacts climatiques ou anthropiques anciens. In Sonké, B., de Saulieu, G., Elouga, M. (Eds) Pour une écologie historique en Afrique Centrale. Yaoundé : IRD Editions, 157-170 p
Garcia, C., Bastin, J.-F., Réjou-Méchain, M., Chamagne, J., Dauby, G., Viennois, G., Droissart, V., Dessard, H., Stévart, T., Hardy, O. J., Gillet, P., Vermeulen, C., Gond, V., Fayolle, A., Bretagnolle, F., Oszwald, J., Doucet, J.-L., Gourlet-Fleury, S., Pélissier, R., 2016. Gateway to the forests of central Africa: towards a unified collaborative model of forest dynamics. ATBC 2016 53th Annual Meeting . Montpellier, France : ATBC 2016 53th Annual Meeting , 18-23/06/2016, Montpellier, France.
Gond, V., Cornu, G., Viennois, G., Betbeder, J., Réjou-Méchain, M., Fayolle, A., Gourlet-Fleury, S., Baghdadi, N., Barbier, N., Mortier, F., Benedet, F., Doumenge, C., 2016. De l’arbre au satellite : comment cartographier la diversité des forêts tropicales d’Afrique Centrale ?. In Rakotoarisoa, N. R. (Ed) Botanists of the twenty-first century: roles, challenges and opportunities. Paris : Unesco, 88-94 p.
Viennois, G.; Proisy, C.; Féret, J.-B.; Prosperi, J.; Sidik, F.; Suhardjono; Rahmania, R.; Longépé, N.; Germain, O.; Gaspar, P. (2016). Multitemporal analysis of high spatial resolution optical satellite imagery for mangrove species mapping in Bali, Indonesia IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 9(8) : 3680-3686. Ouvragepress.
2015
Kennel, P.; Borianne, P. ; Subsol, G. An automated method for tree-ring delineation based on active contours guided by DT-CWT complex coefficients in photographic images; application to abies alba wood slices images. In : Computers and Electronics in Agriculture, vol. 118, October 2015, p 204-214, ISSN 0168-1699.
Kennel, P.; Fiorio, C. ; Borne, F. Supervised Image Segmentation Using Q-Shift Dual-Tree Complex Wavelet Transform Coefficients with a Texton Approach. In : Pattern Analysis and Applications, vol. 18(2), June 2015, p 1-11, DOI: 10.1007/s10044-015-0491-1
2014
Borianne, P. ; Subsol, G. Fast Semi-supervised Segmentation of in Situ Tree Color Images. In : International Conference on Image and Signal Processing, Cherbourg (France), 2014, Lecture Notes in Computer Science 8509, pp. 161–172, Springer.
Brunel, G. ; Borianne, P. ; Subsol, G. ; Jaeger, M. ; Caraglio, Y. Automatic Identification and Characterization of Radial Files in Light Microscopy Images of Wood. In : Annals of Botany, 114: 829-840, 2014. doi: 10.1093/aob/mcu119.
Magnier, B.; Aberkane, A.; Borianne, P. ; Montesinos, P. ; Jourdan, C. Multi-scale crest line extraction based on half gaussian kernels. In : The 39th IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP 2014), May 4-9, 2014, pp 70-76
Viennois, G.; Borne, F.; Spatiotemporal Dynamics of Coastal Savannas Nested In French Guiana Space Center From Pléides Imagery And Aerial Photographs, revue Française de Photogrammétrie et de télédétection n°208, 2014
2013
Brunel, G.; Borianne, P.; Subsol, G.; Jaeger, M. Simple-graphs fusion in image mosaic. Application to automated cell files identification in wood slices. In Kämäräinen, J. K., Koskela, M. Eds, Image analysis : 18th Scandinavian Conference, SCIA 2013, Espoo, Finland, June 17-20, 2013, pp. 34-43
Brunel, G.; Borianne, P.; Subsol, G.; Jaeger, M.; Caraglio, Y. Defining reliability coefficients in an automated method of identification and characterization of radial files in microscopic images of gymnosperms. In Nygren, P., Lintunen, A., Godin, C., Nikinmaa, E., Sievänen, R. Eds, Proceedings of the 7th International Conference on Functional Structural Plant Models, Saariselka, Finland, 9 14 June, 2013, pp. 82-84
Deleuze, C.; Morneau, F.; Constant, T.; Saint-André, L.; Bouvet ,A.; Colin, A.; Vallet, P.; Gauthier, A.;Jaeger, M. Le projet EMERGE pour des tarifs cohérents de volumes et biomasses des essences forestières françaises métropolitaines, 2013, n°39-40, p32-36
de Reffye, P.; Jaeger, M. Modèles mathématiques du développement et de la croissance de l’architecture des plantes. Le cas du modèle GreenLab. In Silberstein, M., Varenne, F. Eds, Modéliser et simuler : épistémologies et pratiques de la modélisation et de la simulation. Tome 1, volume 2, 2013, pp. 629-662
Kennel, P.; Tramon, M.; Barbier, N.; Vincent, G. Canopy height model characteristics derived from airbone laser scanning and its effectiveness in discriminating various tropical moist forest types. In : International Journal of Remote Sensing, 2013, 34(24) : 8917-8935.
Viennois, G.; Barbier, N.; Fabre, I.; Couteron, P. Multiresolution quantification of deciduouness in West central African Forest Biogeosciences, 2013, 10(4) : 6957-6967.
Zhou, J.; Proisy, C.; Décombes, X.; Le Maire, G.; Nouvellon, Y.; Stape, J. L.; Viennois, G.; Zerubia, J.; Couteron, P. Mapping local density of young Eucalyptus plantations by individual tree detection in high spatial resolution satellite images. Forest Ecology and Management, 2013, 301(Special Is) : 129-141.
2012
Brunel, G.; Borianne, P.; Subsol, G.; Jaeger, M.; Caraglio, Y. Automatic charaterization of the cell organization in light microscopic images of wood: application to the identification of the cell file. In Guo, Y., Kang, M. Z., Dumont, Y. Eds, Plant growth modeling, simulation, visualization and applications. Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Shanghai, China, 31 October-3 November, 2012, pp. 58-65
Borianne, P.; Brunel, G. Automated valuation of leaves area for large-scale analysis needing data coupling or petioles deletion. In Guo, Y., Kang, M. Z., Dumont, Y. Eds, Plant growth modeling, simulation, visualization and applications. Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Shanghai, China, 31 October-3 November, 2012, pp. 50-57
Deblauwe, V.; Kennel, P.; Couteron, P. Testing pairwise association between spatially autocorrelated variables: A new approach using surrogate Lattice data. Plos One, 2012, 7(11) : e48766.
Jaeger, M. Enhacing virtual natural scenes using quick and dirty image based recipes. In Guo, Y., Kang, M. Z., Dumont, Y. Eds, Plant growth modeling, simulation, visualization and applications. Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Shanghai, China, 31 October-3 November, 2012, pp. 212-219
2011
Bao, G.; Li, H.; Zhang, X. P.; Che, W.; Jaeger, M. Realistic real-time rendering for large-scale forest scenes. In Pak, J. I., Wang, W., Kajimoto, H., Nii, H. Eds, 1st International Symposium on VR innovation (ISVRI),Singapore, March 19–20, 2011, pp. 217-223
Borianne, P.; Pernaudat, R.; Subsol, G. Automated delineation of tree-rings in X-ray computed tomography images of wood . In the 18th IEEE International Conference on Image Processing (ICIP), Brussels, 437-440
Guo, Y.; Fourcaud, T.; Jaeger, M.; Zhang, X.; Li, B. Plant growth and architectural modelling and its applications. Annals of Botany, 2011, 107(5) : 723-727.
Thapa, R. B.; Borne, F.; Murayama, Y. Land suitability analysis for peri-urban agriculture. In Murayama, Y., Thapa, R. B. Eds, Spatial analysis and modeling in geographical transformation process, 2011, pp. 193-214
Wu, H.; Jaeger, M.; Wang, M.; Li, B.; Zhang, B. G. Three-dimensional distribution of vessels, passage cells and lateral roots along the root axis of winter wheat (Triticum aestivum) Annals of Botany Voir la notice du journal , 2011, 107(5) : 843-853.
2010
Bao, G.; Zhang, X. P.; Che, W.; Jaeger, M. Billboards for tree simplification and realtime forest rendoring. In Guo, Y., Jaeger, M., Li, B. Eds, The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA 09), 9-13 november 2009, Beijing, China, 2010, pp. 433-440
Borne, F.; Subbarayalu, Y.; Muthusankar, G.; Iswarialakshmi, K.; Balasubramanian, D. Digital historical atlas of South India. In Forte, M., Campana, S., Liuzza, C. Eds, Space, Time, Place Third International Conference on Remote Sensing in Archaeology, 7th-21st August 2009, Tiruchirappalli, Tamil Nadu, India, 2010, pp. 373-378
Zhu, C.; Zhang, X.; Jaeger, M. Cluster based Construction of Tree Crown from Scanned Data. In: Li, B. and Jaeger, M. and Guo, Y. (Eds). 2010. Proceedings of Plant growth Modeling, and their Applications (PMA09), Beijing, China, November 9-13, 2010, IEEE CPS, pp. 352-359.
Cournède, P. H.; Guyard, T.; Bayol, B.; Griffon, S.; de Coligny, F.; Borianne, P.; de Reffye, P. A forest growth simulator based on functional-structural modelling of individual trees. In Guo, Y., Jaeger, M., Li, B. Eds, The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA 09), 9-13 november 2009, Beijing, China, 2010, pp. 34-41
Deng, Q. Q.; Zhang, X. P.; Gang, Y.; Jaeger, M. Multiresolution Foliage for Forest Rendering Computer Animation and Virtual Worlds, 2010, 20: 1-23.
Hongjun LI, Xiaopeng Zhang, Marc Jaeger, Thiery Constant, 2010. Segmentation of Forest Terrain Laser Scan Data. In: Proceedings of VRCAI 2010 (9th ACM SIGGRAPH International Conference on Virtual-Reality Continuum and its Applications in Industry). Dec. 12-13, 2010, Seoul,Korea . 2010, Dec. 12-13. ACM New York, NY, USA. ISBN: 978-1-4503-0459-7, pp. 47-54.
Kennel, P.; Subsol, G.; Guéroult, M.; Borianne, P. Automatic identification of cell files in light microscopic images of conifer wood In Djemal, K., Deriche, M. Eds, 2010 2nd International conference on image processing theory, tools and applications, IPTA 2010, Paris, France, July 7-10, 2010, 2010, pp. 93-108
Le Chevalier, V.; Jaeger, M. Bottom-up approach of landscape simulation leading to a generic synchronization formalism and competition model LandMOD. In : the 2010 International conference on integrative landscape modelling, Montpellier, France, 03-05/02/2010
Li, H.; Zhang, X. P.; Che, W.; Jaeger, M. Smooth transition between different plant leaves models. In Guo, Y., Jaeger, M., Li, B. Eds, The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA 09), 9-13 november 2009, Beijing, China, 2010, pp. 376-383
Wu, H.; Jaeger, M.; Wang, M.; Li, B. G.; Zhang, B. G. Three-dimensional reconstruction and visualization of xylem vessels of wheat nodal root. In Guo, Y., Jaeger, M., Li, B. Eds, The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA 09), 9-13 november 2009, Beijing, China, 2010, pp. 384-390